PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g037720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 510aa    MW: 57061 Da    PI: 7.423
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g037720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17148197155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen02g037720.1 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197
                       78*******************......55************************997 PP

2AP243.86.4e-14240290155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Sopen02g037720.1 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 290
                       89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-9148197IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-15148206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-17149205IPR001471AP2/ERF domain
CDDcd000185.26E-11149204No hitNo description
SMARTSM003805.1E-32149211IPR001471AP2/ERF domain
PROSITE profilePS5103217.701149205IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-17240300IPR016177DNA-binding domain
PfamPF008471.4E-9240290IPR001471AP2/ERF domain
CDDcd000188.92E-25240300No hitNo description
PROSITE profilePS5103215.659241298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-16241298IPR001471AP2/ERF domain
SMARTSM003802.9E-31241304IPR001471AP2/ERF domain
PRINTSPR003676.3E-6242253IPR001471AP2/ERF domain
PRINTSPR003676.3E-6280300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MWDLNESEEG CSSPIEFEGD DEKGKRVGSV SNSSSSAVAV DDISEEELDG ERGKKKRGKI  60
FGFSMVGLGN GDEEQPVTRQ FFPVDESEMG GVAAEYGSPN FPRAHWVGVK FYQTETLGNT  120
GLARPVDMVQ QQQQPIKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGVEA DINFSLEDYE SDLKQMTSLT KEEFVHVLRR QSTGFPRGSS  240
KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEIEAARA YDKAAIKCNG KDAVTNFDPS  300
IYENELNSIE STDNVADHNL DLSLGGSSSK QGSRELGDNR GQNSSSIMQL DIDWQRHGLR  360
PEKQSALIDA RRRENRYNET ETLQLLSQTH LHSPASLKHN NNNNSQVQRF GQFMRPGDQS  420
HMIQMFPQQF GSSNYQIQFP SGSNGGRIGA TNVRDLSLAA TSNGSSQWQS NFPPQIFVAA  480
AASSGFPQQI VRPQNWSSEN GFHHSLMRPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136400.0BT013640.1 Lycopersicon esculentum clone 132443F, mRNA sequence.
GenBankHQ5869510.0HQ586951.1 Solanum lycopersicum AP2 transcription factor SlAP2c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063428.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotP479271e-125AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLF6KQN20.0F6KQN2_SOLLC; AP2 transcription factor SlAP2c
STRINGSolyc02g093150.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-115AP2 family protein